Damping-off in Tree Nurseries

Reviewed: March 2023

Damping-off is a disease of germinating, and newly emerged, conifer and hardwood seedlings that results in decay of succulent tissue, wilting, and seedling death. Many species of pathogenic fungi can cause damping-off. Some of the factors influencing damping-off include pathogen populations, host susceptibility, soil temperature, moisture, and pH. The severity of damping-off can vary from field to field and year to year depending on these factors. Managers can reduce damping-off losses in nursery beds with an integrated program of cultural and chemical practices.

Distribution and Hosts

Damping-off is one of the most common disease problems causing seedling losses in North American forest nurseries.9, 36 Although damping-off is often reported by nursery managers to be a slight problem,9, 36 under conditions favorable to disease development, damping-off can have a severe impact on seedling density and final inventory.6 In North America, most conifers and hardwoods are susceptible to damping-off.14 Some tree species are partially resistant, such as seedlings in the cypress (Cupressaceae) family,18 green ash (Fraxinus pennsylvanica var. Lanceolata (Borkh.) Sarg.), honeylocust (Gleditsia triacanthos L.), bur oak (Quercus macrocarpa Michaux.), northern catalpa (Catalpa speciosa Warder.), and hackberry (Celtis occidentalis L.).14, 40


Damping-off is caused by various pathogenic fungi that infect seedlings during germination and after emergence when the seedling tissue is succulent. Four to six weeks after emergence, the seedlings develop woody tissue and the susceptibility to damping-off fungi quickly declines.31, 37 The fungi that cause damping-off vary depending on the host and location. The most common damping-off fungi are species in the genera Fusarium,Phytophthora, Pythium, and Rhizoctonia.6, 14, 23, 29, 33, 38 Other fungi that occasionally cause damping-off include Cylindrocladium spp., Botrytis cinerea Pers.,Sphaeropsis sapinea (Fr.) Dyko and Sutton,15 Macrophomina phaseolina (Tassi) Goid.,6 Alternaria alternata (Fr.) Keissler, Cladosporium cladosporioides (Fres.) de Vries, Penicillium expansum Link20 and Phoma spp.33 Many of these fungi are weak pathogens that invade the succulent tissue of germinating seedlings under environmental conditions that favor the pathogen6 and reduce early seedling growth and vigor.14 These fungi can be present in soil and organic matter,14, 20 and on seeds.15, 20 Sterilized or fumigated soil can be re-colonized by damping-off fungi carried on by wind (on soil particles), water, contaminated equipment,39 mulch, or seed.


Pre-emergence damping-off occurs when fungi infect developing radicals and kill seedlings while shoot tissues are still below ground.14 Random pockets of poor seedling emergence are an indication of pre-emergence damping-off. However, other problems can cause similar effects, including non-uniform seeding of containers or beds, poor seed development, seed decay, and removal of mulch or soil by wind and rain.

Post-emergence damping-off occurs when fungi infect the succulent tissue of germinants with aboveground shoots, causing decay, wilting, and death.6 Infection occurs on the stem at or slightly below the groundline14, 40 and on the roots.18 The infected tissue appears as a purple to brown lesion or as a dark water-soaked area that becomes sunken or constricted. In conifers, post-emergence damping-off results in wilting and collapse of the seedling.6, 14 Hardwood seedlings often remain upright as they wilt until the stem breaks off or rots away.40

Post-emergence damping-off lesions may be confused with heat lesions.17 Heat lesions develop just above the groundline, are usually whitish, and are often located on one side of the stem in the early stage.17 Heat lesion damage occurs scattered throughout nurseries and is dependent on patterns of shade and heat buildup,18 while damping-off often occurs in expanding patches.

Disease Development

Damping-off can cause significant losses in a nursery one year and minor losses the next.18 The susceptibility of seedlings and the activity of damping-off fungi are affected by climatic variations which result in irregular losses and poor correlation of losses with soil fungal populations.41 Other factors affecting damping-off losses include the presence of microorganisms antagonistic to pathogenic fungi,18, 20, 30 poor soil fumigation and rapid re-colonization by damping-off fungi,39 and variation in pathogenicity within fungal species.16, 18, 37

The environmental conditions in which seedlings are grown usually have the greatest influence on the development of damping-off. However, the specific conditions that promote damping-off depend on the pathogens present.

Fusarium. Fusarium damping-off increases with increasing soil pH and with increased nitrogen.37 The effects of temperature on damping-off by Fusarium are mixed and depend on the virulence of the fungus. Highly pathogenic isolates of Fusarium circinatum Nirenberg et O’Donnell (= F. subglutinans f. sp. pini, F. moniliforme var. subglutinans) were less responsive to high temperature than less virulent species that significantly increased damping-off at high (86° F) temperatures.19

Phytophthora. In general, Phytophthora diseases are promoted by water-saturated soils13 and increasing pH up to 8.0.34 Acidifying soil to a pH of 4.6 controlled damping-off of black locust (Robinia pseudoacacia L.) by P. parasitica Dast.24 The effects of temperature and nitrogen on Phytophthora diseases are variable for other crops, and have not been well documented for damping-off of forest tree species in the United States.

Pythium. Pythium damping-off increases under high soil moisture42 and pH greater than 5.8.30, 31 The effect of temperature on Pythium is variable and depends on the growth rates of the host and fungus. Pre-emergence infection is greater when temperatures are more favorable for the fungus than for the host.25, 30 For example, high soil moisture combined with warm (64° to 86° F) temperatures can favor damping-off by Pythium. However, pre-emergence damping-off by Pythium can also be very damaging at low temperatures (54° F) when combined with high moisture and the absence of competitive microbes. This Pythium damping-off corresponds to the slow growth and emergence of the host at low temperatures.30

Rhizoctonia. Rhizoctonia damping-off losses increase with increasing soil temperatures and increasing dryness.42 Although excessive moisture was shown to decrease Rhizoctonia damping off for red pine grown in sand, these conditions are favorable for other damping off organisms.30 Rhizoctonia is less affected by pH,21 and the activity of Rhizoctonia in the soil is greatly stimulated by nitrogen. In soils with high carbon to nitrogen ratios, the activity of Rhizoctonia decreases.27

Beneficial microorganisms. Environmental conditions can affect populations of beneficial microorganisms as well as pathogens. For example, Trichoderma harzianum Rifai populations are greater in acidic soil conditions and suppress Rhizoctonia solani Kühn at a soil pH of 4.3.20 A reduction in damping-off of pine (Pinus, spp.) seedlings by competing microorganisms also occurs with Pythium spp.,18, 30 Fusarium spp.,8, 28 and Cylindrocladium scoparium Morg.43


Nursery managers can reduce damping-off by promoting fast germination and good seedling growth.14 Managers have a great deal of control over the factors that affect damping-off in the field, outside of the weather. Soil drainage, organic matter, and pH can be influenced. The timing and depth of sowing and irrigation can be controlled to improve germination. Nitrogen application can be delayed until seedlings are past the danger of damping-off. If necessary, fumigants and fungicides are available to control disease development.

Soil condition. Manipulation of the soil condition in the nursery beds can greatly affect damping-off. Soil drainage can be improved by sub-soiling, crowning the beds, installing drainage tiles, and adding composted organic matter, such as composted conifer bark. Organic matter affects soil texture, water-holding capacity, nutrient availability, cation exchange capacity, soil pH, and the presence and function of microorganisms. These changes are usually positive for seedling growth and survival when the origin and quality of the organic amendments are known. However, managers need to watch for N and Fe deficiencies and increases in soil pH that can occur with the addition of some organic amendments.11 The pH of the soil can be returned to optimum (pH 5.2 to 5.7) with applications of aluminum sulfate, sulfur or acid peat.33 Although alkaline irrigation water can also increase soil pH over time, the water can be acidified by the addition of sulfuric or phosphoric acid if necessary.33

Cover crops. Cover crops are used to produce some organic matter and protect the soil from erosion and leaching.11 They are also used as an alternate crop for disease control, but this benefit can vary with the species of cover crop. Legume cover crops often favor greater populations of damping-off fungi than grass crops.16, 33 This difference can sometimes extend beyond fumigation.16 Fallow fields have lower populations of damping-off fungi than fields in cover crops,33 and are comparable to fumigated fields that had been in cover crops.16

Sowing. Usually seeds are sown when conditions are most favorable for fast and even germination. However, managers may be forced to sow seeds in an unusually warm or wet spring. This may favor fast germination but will require greater attention to watering. To avoid damping-off, soils should be irrigated to the depth of the growing roots without flooding the soil.

Fumigants. In a 1993 national survey of forest nursery managers, routine soil fumigation was used to control soilborne disease, insects, and weeds by 86% of nurseries that produced bareroot tree seedlings.35 Fumigants that reduce the soilborne pathogens associated with damping-off include 67% methyl bromide/33% chloropicrin, metam sodium,38 100% chloropicrin, dazomet,16 and 1,3-dichloropropene.10

Fungicides. Fungicides are used in many forest nurseries in an attempt to prevent damping-off, however, results are erratic.22, 23, 33 In general, fungicides are most effective when targeted at a specific pathogen and applied prior to disease development. Since predicting damping-off is difficult,41 managers often rely on experience with the pathogens and conditions that cause damping-off, and the fungicides, if any, that provided some control. To determine if a fungicide in use is providing control of damping-off, a few untreated plots can be established in the beds or containers. This test may have to be repeated for several years to get an accurate assessment of a fungicide’s efficacy. When a new chemical is to be used, it can be tested in a small area before it is applied to the entire crop.

A number of fungicides currently in use by nurseries are very specific concerning the damping-off pathogens they control. Pre-plant application of mefenoxam (metalaxyl), fosetyl-aluminum, or etridiazole can be used to prevent damping-off by Pythium and Phytophthora. Drench applications of thiophanate-methyl may reduce damping-off by Fusarium, Rhizoctonia, Botrytis, and Cylindrocladium. Iprodione is a pre-plant drench for control of Rhizoctonia and a foliar spray for control of Botrytis. Broad-spectrum fungicides used to prevent damping-off include captan and a fungicide containing both etridiazole and thiophanate-methyl. Fungicides with different modes of action should be alternated to prevent the development of resistant pathogens.22, 33, 38

Seed Treatment

Seed treatments to control damping-off also provide variable results.38 Fungicides and sterilants can reduce pathogenic fungi on the seed coat and improve germination.1, 3 However, some of these same treatments can have phytotoxic effects depending on the species of seed, condition of the seed coat, and application method.2, 5, 7, 32, 38

Thiram is the most commonly applied seed treatment for use as a bird and small mammal repellant as well as a fungicide for specific damping-off pathogens, such as Fusarium,3, 26 Pythium and Rhizoctonia.38 Thiram has been shown to increase germination of southern pine seed with poor germination rates of 33% or less.3 However, thiram has also been shown to delay or reduce germination of seeds of longleaf pine, and slash pine,32 as well as some tree species including Douglas-fir,5 red pine,4 and white spruce.12 Few studies have determined whether the benefit of thiram as an animal repellent and fungicide exceeds its possible phytotoxic effect in the field.

Hydrogen dioxide is a surface sterilant registered as a fungicide for tree seed. Hydrogen dioxide will reduce recovery of Fusarium spp. on longleaf pine seed without phytotoxicity.1 Seed treatments with sodium hypochlorite (bleach) and hydrogen peroxide can reduce pathogenic fungi on the seed coat and improve seed germination.2, 7 But these seed treatments can also reduce seed germination depending on the species, concentration, and duration of application.2, 7 Cleansing seed surfaces with a running water soak for 48 hours is a non-toxic treatment that relies on mechanical removal of pathogens.7 This treatment can be used in combination with sterilants as a rinse.


Damping-off is a common disease problem in forest nurseries during the first 4 to 6 weeks after sowing. The primary fungi involved in damping-off are Pythium, Rhizoctonia, Fusarium, and Phytophthora species. Many damping-off fungi are relatively weak pathogens that require environmental conditions that favor infection. The severity of damping-off is highly dependent on whether the soil moisture, temperature, and pH are more beneficial to the growth of the host or the pathogen. Other factors that can affect development of the disease, aside from host susceptibility and pathogen populations, include the level of available nitrogen, presence of antagonistic microorganisms, and variation in pathogenicity within a fungal species. Managers can reduce the risk of damping-off by promoting environmental conditions for fast germination and good seedling growth. Fumigants and fungicides can also be used to reduce populations of pathogens and prevent seedling infection. Pesticides can be phytotoxic and should be used with caution.


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